STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XRCC4X-ray repair cross complementing 4. (322 aa)    
Predicted Functional Partners:
LIG4
DNA ligase 4.
    
 0.963
XRCC6
X-ray repair cross complementing 6.
     
 0.962
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
     
 0.939
ENSCAPP00000010526
annotation not available
     
 0.937
KPTN
Kaptin, actin binding protein.
    
 0.935
XRCC1
X-ray repair cross complementing 1.
     
 0.934
ENSCAPP00000016271
annotation not available
  
 
 0.933
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.931
ATM
ATM serine/threonine kinase.
     
 0.926
ENSCAPP00000008386
annotation not available
   
 
 0.924
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.