SCUBE3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

SCUBE3

Signal peptide, CUB domain and EGF like domain containing 3. (974 aa)

Predicted Functional Partners:

NPNT

0.839

MATN2

0.839

ENSCAPP00000000270

0.791

MYSM1

0.787

IHH

0.680

ENSCAPP00000017228

0.680

MMP2

0.675

HIVEP3

0.644

ANKS1A

0.636

ENSCAPP00000001007

0.622

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKS1A	ENSCAPP00000001007	ENSCAPP00000018516	ENSCAPP00000001007	Ankyrin repeat and sterile alpha motif domain containing 1A.	annotation not available	0.606
ANKS1A	MYSM1	ENSCAPP00000018516	ENSCAPP00000004064	Ankyrin repeat and sterile alpha motif domain containing 1A.	Myb like, SWIRM and MPN domains 1.	0.576
ANKS1A	SCUBE3	ENSCAPP00000018516	ENSCAPP00000003602	Ankyrin repeat and sterile alpha motif domain containing 1A.	Signal peptide, CUB domain and EGF like domain containing 3.	0.636
ENSCAPP00000000270	HIVEP3	ENSCAPP00000000270	ENSCAPP00000007216	annotation not available	HIVEP zinc finger 3.	0.789
ENSCAPP00000000270	MATN2	ENSCAPP00000000270	ENSCAPP00000006720	annotation not available	Matrilin 2.	0.563
ENSCAPP00000000270	MYSM1	ENSCAPP00000000270	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.812
ENSCAPP00000000270	SCUBE3	ENSCAPP00000000270	ENSCAPP00000003602	annotation not available	Signal peptide, CUB domain and EGF like domain containing 3.	0.791
ENSCAPP00000001007	ANKS1A	ENSCAPP00000001007	ENSCAPP00000018516	annotation not available	Ankyrin repeat and sterile alpha motif domain containing 1A.	0.606
ENSCAPP00000001007	MYSM1	ENSCAPP00000001007	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.423
ENSCAPP00000001007	SCUBE3	ENSCAPP00000001007	ENSCAPP00000003602	annotation not available	Signal peptide, CUB domain and EGF like domain containing 3.	0.622
ENSCAPP00000017228	MATN2	ENSCAPP00000017228	ENSCAPP00000006720	annotation not available	Matrilin 2.	0.528
ENSCAPP00000017228	MMP2	ENSCAPP00000017228	ENSCAPP00000003871	annotation not available	Matrix metallopeptidase 2.	0.979
ENSCAPP00000017228	SCUBE3	ENSCAPP00000017228	ENSCAPP00000003602	annotation not available	Signal peptide, CUB domain and EGF like domain containing 3.	0.680
HIVEP3	ENSCAPP00000000270	ENSCAPP00000007216	ENSCAPP00000000270	HIVEP zinc finger 3.	annotation not available	0.789
HIVEP3	MYSM1	ENSCAPP00000007216	ENSCAPP00000004064	HIVEP zinc finger 3.	Myb like, SWIRM and MPN domains 1.	0.556
HIVEP3	SCUBE3	ENSCAPP00000007216	ENSCAPP00000003602	HIVEP zinc finger 3.	Signal peptide, CUB domain and EGF like domain containing 3.	0.644
IHH	MYSM1	ENSCAPP00000016593	ENSCAPP00000004064	Indian hedgehog signaling molecule.	Myb like, SWIRM and MPN domains 1.	0.423
IHH	SCUBE3	ENSCAPP00000016593	ENSCAPP00000003602	Indian hedgehog signaling molecule.	Signal peptide, CUB domain and EGF like domain containing 3.	0.680
MATN2	ENSCAPP00000000270	ENSCAPP00000006720	ENSCAPP00000000270	Matrilin 2.	annotation not available	0.563
MATN2	ENSCAPP00000017228	ENSCAPP00000006720	ENSCAPP00000017228	Matrilin 2.	annotation not available	0.528