ENSCAPP00000003646 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000003646

annotation not available (258 aa)

Predicted Functional Partners:

CIITA

0.999

RFXANK

0.999

RFX7

0.951

ENSCAPP00000006425

0.910

INPP5E

0.845

OCRL

0.843

SYNJ2

0.833

PIP5K1B

0.833

ENSCAPP00000009552

0.833

SACM1L

0.833

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIITA	ENSCAPP00000003646	ENSCAPP00000005762	ENSCAPP00000003646	Class II major histocompatibility complex transactivator.	annotation not available	0.999
CIITA	ENSCAPP00000006425	ENSCAPP00000005762	ENSCAPP00000006425	Class II major histocompatibility complex transactivator.	annotation not available	0.621
CIITA	RFXANK	ENSCAPP00000005762	ENSCAPP00000006621	Class II major histocompatibility complex transactivator.	Regulatory factor X associated ankyrin containing protein.	0.995
ENSCAPP00000003646	CIITA	ENSCAPP00000003646	ENSCAPP00000005762	annotation not available	Class II major histocompatibility complex transactivator.	0.999
ENSCAPP00000003646	ENSCAPP00000006425	ENSCAPP00000003646	ENSCAPP00000006425	annotation not available	annotation not available	0.910
ENSCAPP00000003646	ENSCAPP00000009552	ENSCAPP00000003646	ENSCAPP00000009552	annotation not available	annotation not available	0.833
ENSCAPP00000003646	INPP5E	ENSCAPP00000003646	ENSCAPP00000011578	annotation not available	Inositol polyphosphate-5-phosphatase E.	0.845
ENSCAPP00000003646	OCRL	ENSCAPP00000003646	ENSCAPP00000001645	annotation not available	OCRL inositol polyphosphate-5-phosphatase.	0.843
ENSCAPP00000003646	PIP5K1B	ENSCAPP00000003646	ENSCAPP00000008026	annotation not available	Phosphatidylinositol-4-phosphate 5-kinase type 1 beta.	0.833
ENSCAPP00000003646	RFX7	ENSCAPP00000003646	ENSCAPP00000012861	annotation not available	Regulatory factor X7.	0.951
ENSCAPP00000003646	RFXANK	ENSCAPP00000003646	ENSCAPP00000006621	annotation not available	Regulatory factor X associated ankyrin containing protein.	0.999
ENSCAPP00000003646	SACM1L	ENSCAPP00000003646	ENSCAPP00000013118	annotation not available	SAC1 like phosphatidylinositide phosphatase.	0.833
ENSCAPP00000003646	SYNJ2	ENSCAPP00000003646	ENSCAPP00000000474	annotation not available	Synaptojanin 2.	0.833
ENSCAPP00000006425	CIITA	ENSCAPP00000006425	ENSCAPP00000005762	annotation not available	Class II major histocompatibility complex transactivator.	0.621
ENSCAPP00000006425	ENSCAPP00000003646	ENSCAPP00000006425	ENSCAPP00000003646	annotation not available	annotation not available	0.910
ENSCAPP00000006425	RFX7	ENSCAPP00000006425	ENSCAPP00000012861	annotation not available	Regulatory factor X7.	0.917
ENSCAPP00000009552	ENSCAPP00000003646	ENSCAPP00000009552	ENSCAPP00000003646	annotation not available	annotation not available	0.833
ENSCAPP00000009552	INPP5E	ENSCAPP00000009552	ENSCAPP00000011578	annotation not available	Inositol polyphosphate-5-phosphatase E.	0.915
ENSCAPP00000009552	OCRL	ENSCAPP00000009552	ENSCAPP00000001645	annotation not available	OCRL inositol polyphosphate-5-phosphatase.	0.913
ENSCAPP00000009552	PIP5K1B	ENSCAPP00000009552	ENSCAPP00000008026	annotation not available	Phosphatidylinositol-4-phosphate 5-kinase type 1 beta.	0.911