RPL17-C18orf32 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPL17-C18orf32

RPL17-C18orf32 readthrough. (168 aa)

Predicted Functional Partners:

RPL19

0.995

RPL23

0.995

RPL8

0.994

ENSCAPP00000004779

0.994

RPL5

0.994

ENSCAPP00000000576

0.993

ENSCAPP00000004781

0.993

RPL14

0.993

RPL32

0.993

ENSCAPP00000012651

0.993

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000576	ENSCAPP00000004779	ENSCAPP00000000576	ENSCAPP00000004779	annotation not available	annotation not available	0.998
ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	annotation not available	annotation not available	0.990
ENSCAPP00000000576	ENSCAPP00000012651	ENSCAPP00000000576	ENSCAPP00000012651	annotation not available	annotation not available	0.999
ENSCAPP00000000576	RPL14	ENSCAPP00000000576	ENSCAPP00000006191	annotation not available	Ribosomal protein L14.	0.999
ENSCAPP00000000576	RPL17-C18orf32	ENSCAPP00000000576	ENSCAPP00000003664	annotation not available	RPL17-C18orf32 readthrough.	0.993
ENSCAPP00000000576	RPL19	ENSCAPP00000000576	ENSCAPP00000009304	annotation not available	Ribosomal protein L19.	0.999
ENSCAPP00000000576	RPL23	ENSCAPP00000000576	ENSCAPP00000017030	annotation not available	Ribosomal protein L23.	0.999
ENSCAPP00000000576	RPL32	ENSCAPP00000000576	ENSCAPP00000010965	annotation not available	Ribosomal protein L32.	0.998
ENSCAPP00000000576	RPL5	ENSCAPP00000000576	ENSCAPP00000013511	annotation not available	Ribosomal protein L5.	0.998
ENSCAPP00000000576	RPL8	ENSCAPP00000000576	ENSCAPP00000003457	annotation not available	Ribosomal protein L8.	0.998
ENSCAPP00000004779	ENSCAPP00000000576	ENSCAPP00000004779	ENSCAPP00000000576	annotation not available	annotation not available	0.998
ENSCAPP00000004779	ENSCAPP00000004781	ENSCAPP00000004779	ENSCAPP00000004781	annotation not available	annotation not available	0.998
ENSCAPP00000004779	ENSCAPP00000012651	ENSCAPP00000004779	ENSCAPP00000012651	annotation not available	annotation not available	0.999
ENSCAPP00000004779	RPL14	ENSCAPP00000004779	ENSCAPP00000006191	annotation not available	Ribosomal protein L14.	0.999
ENSCAPP00000004779	RPL17-C18orf32	ENSCAPP00000004779	ENSCAPP00000003664	annotation not available	RPL17-C18orf32 readthrough.	0.994
ENSCAPP00000004779	RPL19	ENSCAPP00000004779	ENSCAPP00000009304	annotation not available	Ribosomal protein L19.	0.999
ENSCAPP00000004779	RPL23	ENSCAPP00000004779	ENSCAPP00000017030	annotation not available	Ribosomal protein L23.	0.999
ENSCAPP00000004779	RPL32	ENSCAPP00000004779	ENSCAPP00000010965	annotation not available	Ribosomal protein L32.	0.999
ENSCAPP00000004779	RPL5	ENSCAPP00000004779	ENSCAPP00000013511	annotation not available	Ribosomal protein L5.	0.999
ENSCAPP00000004779	RPL8	ENSCAPP00000004779	ENSCAPP00000003457	annotation not available	Ribosomal protein L8.	0.999