PRPF40A protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

PRPF40A

pre-mRNA processing factor 40 homolog A. (732 aa)

Predicted Functional Partners:

RBM25

0.999

SF3A1

0.998

ENSCAPP00000011676

0.997

SF3B1

0.994

ENSCAPP00000001654

0.993

ENSCAPP00000017572

0.992

SNRPC

0.974

ENSCAPP00000009270

0.972

U2SURP

0.971

HTT

0.971

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001654	ENSCAPP00000009270	ENSCAPP00000001654	ENSCAPP00000009270	annotation not available	annotation not available	0.993
ENSCAPP00000001654	ENSCAPP00000011676	ENSCAPP00000001654	ENSCAPP00000011676	annotation not available	annotation not available	0.971
ENSCAPP00000001654	ENSCAPP00000017572	ENSCAPP00000001654	ENSCAPP00000017572	annotation not available	annotation not available	0.996
ENSCAPP00000001654	PRPF40A	ENSCAPP00000001654	ENSCAPP00000003679	annotation not available	pre-mRNA processing factor 40 homolog A.	0.993
ENSCAPP00000001654	RBM25	ENSCAPP00000001654	ENSCAPP00000002345	annotation not available	RNA binding motif protein 25.	0.951
ENSCAPP00000001654	SF3A1	ENSCAPP00000001654	ENSCAPP00000015247	annotation not available	Splicing factor 3a subunit 1.	0.999
ENSCAPP00000001654	SF3B1	ENSCAPP00000001654	ENSCAPP00000003928	annotation not available	Splicing factor 3b subunit 1.	0.999
ENSCAPP00000001654	SNRPC	ENSCAPP00000001654	ENSCAPP00000002309	annotation not available	Small nuclear ribonucleoprotein polypeptide C.	0.998
ENSCAPP00000001654	U2SURP	ENSCAPP00000001654	ENSCAPP00000016065	annotation not available	U2 snRNP associated SURP domain containing.	0.999
ENSCAPP00000009270	ENSCAPP00000001654	ENSCAPP00000009270	ENSCAPP00000001654	annotation not available	annotation not available	0.993
ENSCAPP00000009270	ENSCAPP00000011676	ENSCAPP00000009270	ENSCAPP00000011676	annotation not available	annotation not available	0.535
ENSCAPP00000009270	ENSCAPP00000017572	ENSCAPP00000009270	ENSCAPP00000017572	annotation not available	annotation not available	0.922
ENSCAPP00000009270	PRPF40A	ENSCAPP00000009270	ENSCAPP00000003679	annotation not available	pre-mRNA processing factor 40 homolog A.	0.972
ENSCAPP00000009270	RBM25	ENSCAPP00000009270	ENSCAPP00000002345	annotation not available	RNA binding motif protein 25.	0.991
ENSCAPP00000009270	SF3A1	ENSCAPP00000009270	ENSCAPP00000015247	annotation not available	Splicing factor 3a subunit 1.	0.985
ENSCAPP00000009270	SF3B1	ENSCAPP00000009270	ENSCAPP00000003928	annotation not available	Splicing factor 3b subunit 1.	0.995
ENSCAPP00000009270	SNRPC	ENSCAPP00000009270	ENSCAPP00000002309	annotation not available	Small nuclear ribonucleoprotein polypeptide C.	0.925
ENSCAPP00000009270	U2SURP	ENSCAPP00000009270	ENSCAPP00000016065	annotation not available	U2 snRNP associated SURP domain containing.	0.972
ENSCAPP00000011676	ENSCAPP00000001654	ENSCAPP00000011676	ENSCAPP00000001654	annotation not available	annotation not available	0.971
ENSCAPP00000011676	ENSCAPP00000009270	ENSCAPP00000011676	ENSCAPP00000009270	annotation not available	annotation not available	0.535