Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003685annotation not available (150 aa)    
Predicted Functional Partners:
TEX12
Testis expressed 12.
    
 0.990
SYCE3
Synaptonemal complex central element protein 3.
    
 0.985
ENSCAPP00000008954
annotation not available
    
 0.926
SPO11
SPO11 initiator of meiotic double stranded breaks.
      
 0.885
ENSCAPP00000001537
annotation not available
    
 0.882
STAG1
Stromal antigen 1.
     
 0.833
ENSCAPP00000003423
annotation not available
    
 0.814
SMC3
Structural maintenance of chromosomes 3.
     
 0.797
ENSCAPP00000002555
annotation not available
      
 0.749
ATAT1
Alpha tubulin acetyltransferase 1.
      
 0.689
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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