STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003696annotation not available (530 aa)    
Predicted Functional Partners:
ENSCAPP00000009222
annotation not available
     
  0.771
PDZD8
PDZ domain containing 8.
   
 0.750
VAPA
VAMP associated protein A.
    
 0.584
ANKZF1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
     
  0.570
ENSCAPP00000009358
annotation not available
     
  0.570
ENSCAPP00000011409
annotation not available
     
  0.570
MTX2
Metaxin 2.
     
  0.568
VAPB
VAMP associated protein B and C.
    
 0.552
SAMM50
SAMM50 sorting and assembly machinery component.
     
  0.546
VCP
Valosin containing protein.
     
  0.533
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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