ENSCAPP00000003714 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000003714

annotation not available (450 aa)

Predicted Functional Partners:

TUBA4A

0.908

TUBB6

0.903

TUBB1

0.900

ENSCAPP00000000321

0.885

ENSCAPP00000012429

0.864

KIF5B

0.842

ENSCAPP00000010449

0.842

KIF5A

0.842

ENSCAPP00000001394

0.838

ENSCAPP00000009399

0.838

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000321	ENSCAPP00000003714	ENSCAPP00000000321	ENSCAPP00000003714	annotation not available	annotation not available	0.885
ENSCAPP00000000321	ENSCAPP00000010449	ENSCAPP00000000321	ENSCAPP00000010449	annotation not available	annotation not available	0.959
ENSCAPP00000000321	ENSCAPP00000012429	ENSCAPP00000000321	ENSCAPP00000012429	annotation not available	annotation not available	0.969
ENSCAPP00000000321	KIF5A	ENSCAPP00000000321	ENSCAPP00000013417	annotation not available	Kinesin family member 5A.	0.956
ENSCAPP00000000321	KIF5B	ENSCAPP00000000321	ENSCAPP00000002798	annotation not available	Kinesin family member 5B.	0.956
ENSCAPP00000000321	TUBA4A	ENSCAPP00000000321	ENSCAPP00000017321	annotation not available	Tubulin alpha 4a.	0.996
ENSCAPP00000000321	TUBB1	ENSCAPP00000000321	ENSCAPP00000000296	annotation not available	Tubulin beta 1 class VI.	0.876
ENSCAPP00000000321	TUBB6	ENSCAPP00000000321	ENSCAPP00000018416	annotation not available	Tubulin beta 6 class V.	0.940
ENSCAPP00000001394	ENSCAPP00000003714	ENSCAPP00000001394	ENSCAPP00000003714	annotation not available	annotation not available	0.838
ENSCAPP00000001394	ENSCAPP00000010449	ENSCAPP00000001394	ENSCAPP00000010449	annotation not available	annotation not available	0.931
ENSCAPP00000001394	ENSCAPP00000012429	ENSCAPP00000001394	ENSCAPP00000012429	annotation not available	annotation not available	0.938
ENSCAPP00000001394	KIF5A	ENSCAPP00000001394	ENSCAPP00000013417	annotation not available	Kinesin family member 5A.	0.931
ENSCAPP00000001394	KIF5B	ENSCAPP00000001394	ENSCAPP00000002798	annotation not available	Kinesin family member 5B.	0.927
ENSCAPP00000001394	TUBA4A	ENSCAPP00000001394	ENSCAPP00000017321	annotation not available	Tubulin alpha 4a.	0.981
ENSCAPP00000001394	TUBB1	ENSCAPP00000001394	ENSCAPP00000000296	annotation not available	Tubulin beta 1 class VI.	0.515
ENSCAPP00000001394	TUBB6	ENSCAPP00000001394	ENSCAPP00000018416	annotation not available	Tubulin beta 6 class V.	0.872
ENSCAPP00000003714	ENSCAPP00000000321	ENSCAPP00000003714	ENSCAPP00000000321	annotation not available	annotation not available	0.885
ENSCAPP00000003714	ENSCAPP00000001394	ENSCAPP00000003714	ENSCAPP00000001394	annotation not available	annotation not available	0.838
ENSCAPP00000003714	ENSCAPP00000009399	ENSCAPP00000003714	ENSCAPP00000009399	annotation not available	annotation not available	0.838
ENSCAPP00000003714	ENSCAPP00000010449	ENSCAPP00000003714	ENSCAPP00000010449	annotation not available	annotation not available	0.842