STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS1Pseudouridine synthase 1. (322 aa)    
Predicted Functional Partners:
WDR4
WD repeat domain 4.
   
 
 0.932
TRUB1
TruB pseudouridine synthase family member 1.
  
 0.916
DKC1
Dyskerin pseudouridine synthase 1.
  
 0.914
TRUB2
TruB pseudouridine synthase family member 2.
  
 0.873
ENSCAPP00000011460
annotation not available
  
 
 0.846
POLR2C
RNA polymerase II subunit C.
  
  
 0.785
POLR1C
RNA polymerase I and III subunit C.
  
  
 0.785
WDR12
WD repeat domain 12.
   
   0.780
METTL1
Methyltransferase like 1.
  
 
 0.766
DDX18
DEAD-box helicase 18.
  
  
 0.762
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.