Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3B4Splicing factor 3b subunit 4. (356 aa)    
Predicted Functional Partners:
SF3B3
Splicing factor 3b subunit 3.
   
 0.999
ENSCAPP00000001654
annotation not available
   
 0.999
SF3B2
Splicing factor 3b subunit 2.
   
 0.999
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
SF3A1
Splicing factor 3a subunit 1.
   
 0.999
SF3A3
Splicing factor 3a subunit 3.
   
 0.998
SF3B1
Splicing factor 3b subunit 1.
    
 0.998
PHF5A
PHD finger protein 5A.
   
 0.998
DHX15
DEAH-box helicase 15.
   
 0.998
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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