STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP40Ubiquitin specific peptidase 40. (1172 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.928
TP53
Tumor protein p53.
    
 0.920
GMPS
Guanine monophosphate synthase.
   
 
 0.886
UVSSA
UV stimulated scaffold protein A.
    
 0.865
DAXX
Death domain associated protein.
    
 0.855
ENSCAPP00000010800
annotation not available
   
 0.852
HID1
HID1 domain containing.
    
 
 0.831
DNMT1
DNA methyltransferase 1.
   
 
 0.819
ENSCAPP00000016912
annotation not available
   
 0.804
YTHDC1
YTH domain containing 1.
   
  
 0.757
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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