Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALKBH8alkB homolog 8, tRNA methyltransferase. (478 aa)    
Predicted Functional Partners:
ALKBH2
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
      
 0.870
ALKBH1
alkB homolog 1, histone H2A dioxygenase.
      
 0.855
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
      
 0.747
AFDN
Afadin, adherens junction formation factor.
    
  0.677
FTO
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.677
ALKBH7
alkB homolog 7.
      
 0.665
NDUFS2
NADH:ubiquinone oxidoreductase core subunit S2.
   
  
 0.614
SRM
Spermidine synthase.
      
 0.614
ENSCAPP00000014353
annotation not available
   
  
 0.591
RSF1
Remodeling and spacing factor 1.
   
  
 0.583
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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