Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GTF2E1General transcription factor IIE subunit 1. (420 aa)    
Predicted Functional Partners:
GTF2E2
General transcription factor IIE subunit 2.
   
 0.999
GTF2F1
General transcription factor IIF subunit 1.
    
 0.998
TBP
TATA-box binding protein.
   
 0.998
GTF2B
General transcription factor IIB.
    
 0.996
GTF2H4
General transcription factor IIH subunit 4.
   
 0.995
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.995
TAF2
TATA-box binding protein associated factor 2.
   
 0.994
ERCC2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.993
ENSCAPP00000002475
annotation not available
   
 0.993
TCEA1
Transcription elongation factor A1.
    
 0.993
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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