ENSCAPP00000003828 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000003828

annotation not available (260 aa)

Predicted Functional Partners:

LNX1

0.665

MET

0.649

MST1R

0.649

ENSCAPP00000004081

0.627

ESYT1

0.588

ESYT3

0.577

SPINK14

0.577

PTK7

0.554

PAG1

0.551

ENSCAPP00000006858

0.551

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000003828	ENSCAPP00000004081	ENSCAPP00000003828	ENSCAPP00000004081	annotation not available	annotation not available	0.627
ENSCAPP00000003828	ENSCAPP00000006858	ENSCAPP00000003828	ENSCAPP00000006858	annotation not available	annotation not available	0.551
ENSCAPP00000003828	ESYT1	ENSCAPP00000003828	ENSCAPP00000000979	annotation not available	Extended synaptotagmin 1.	0.588
ENSCAPP00000003828	ESYT3	ENSCAPP00000003828	ENSCAPP00000003516	annotation not available	Extended synaptotagmin 3.	0.577
ENSCAPP00000003828	LNX1	ENSCAPP00000003828	ENSCAPP00000015417	annotation not available	Ligand of numb-protein X 1.	0.665
ENSCAPP00000003828	MET	ENSCAPP00000003828	ENSCAPP00000006936	annotation not available	MET proto-oncogene, receptor tyrosine kinase.	0.649
ENSCAPP00000003828	MST1R	ENSCAPP00000003828	ENSCAPP00000010541	annotation not available	Macrophage stimulating 1 receptor.	0.649
ENSCAPP00000003828	PAG1	ENSCAPP00000003828	ENSCAPP00000002310	annotation not available	Phosphoprotein membrane anchor with glycosphingolipid microdomains 1.	0.551
ENSCAPP00000003828	PTK7	ENSCAPP00000003828	ENSCAPP00000012661	annotation not available	Protein tyrosine kinase 7 (inactive).	0.554
ENSCAPP00000003828	SPINK14	ENSCAPP00000003828	ENSCAPP00000007554	annotation not available	Serine peptidase inhibitor, Kazal type 14 (putative).	0.577
ENSCAPP00000004081	ENSCAPP00000003828	ENSCAPP00000004081	ENSCAPP00000003828	annotation not available	annotation not available	0.627
ENSCAPP00000004081	ENSCAPP00000006858	ENSCAPP00000004081	ENSCAPP00000006858	annotation not available	annotation not available	0.551
ENSCAPP00000004081	ESYT1	ENSCAPP00000004081	ENSCAPP00000000979	annotation not available	Extended synaptotagmin 1.	0.435
ENSCAPP00000004081	ESYT3	ENSCAPP00000004081	ENSCAPP00000003516	annotation not available	Extended synaptotagmin 3.	0.415
ENSCAPP00000004081	LNX1	ENSCAPP00000004081	ENSCAPP00000015417	annotation not available	Ligand of numb-protein X 1.	0.599
ENSCAPP00000004081	MET	ENSCAPP00000004081	ENSCAPP00000006936	annotation not available	MET proto-oncogene, receptor tyrosine kinase.	0.649
ENSCAPP00000004081	MST1R	ENSCAPP00000004081	ENSCAPP00000010541	annotation not available	Macrophage stimulating 1 receptor.	0.649
ENSCAPP00000004081	PAG1	ENSCAPP00000004081	ENSCAPP00000002310	annotation not available	Phosphoprotein membrane anchor with glycosphingolipid microdomains 1.	0.551
ENSCAPP00000004081	PTK7	ENSCAPP00000004081	ENSCAPP00000012661	annotation not available	Protein tyrosine kinase 7 (inactive).	0.554
ENSCAPP00000004081	SPINK14	ENSCAPP00000004081	ENSCAPP00000007554	annotation not available	Serine peptidase inhibitor, Kazal type 14 (putative).	0.456