Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IFT122Intraflagellar transport 122. (1229 aa)    
Predicted Functional Partners:
TTC21B
Tetratricopeptide repeat domain 21B.
   
 0.999
IFT43
Intraflagellar transport 43.
    
 0.999
IFT140
Intraflagellar transport 140.
   
 0.999
WDR19
WD repeat domain 19.
   
 0.999
WDR35
WD repeat domain 35.
   
 0.999
IFT46
Intraflagellar transport 46.
    
 0.994
IFT88
Intraflagellar transport 88.
   
 0.993
IFT172
Intraflagellar transport 172.
   
 0.992
TTC21A
Tetratricopeptide repeat domain 21A.
   
 0.991
IFT57
Intraflagellar transport 57.
   
 0.991
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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