CDT1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CDT1

Chromatin licensing and DNA replication factor 1. (436 aa)

Predicted Functional Partners:

ORC1

0.999

MCM6

0.999

ENSCAPP00000002903

0.999

MCM2

0.999

ENSCAPP00000009470

0.999

GMNN

0.999

ENSCAPP00000013166

0.999

MCM3

0.999

CDC6

0.999

ORC4

0.997

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC6	CDT1	ENSCAPP00000018679	ENSCAPP00000003853	Cell division cycle 6.	Chromatin licensing and DNA replication factor 1.	0.999
CDC6	ENSCAPP00000002903	ENSCAPP00000018679	ENSCAPP00000002903	Cell division cycle 6.	annotation not available	0.996
CDC6	ENSCAPP00000009470	ENSCAPP00000018679	ENSCAPP00000009470	Cell division cycle 6.	annotation not available	0.999
CDC6	ENSCAPP00000013166	ENSCAPP00000018679	ENSCAPP00000013166	Cell division cycle 6.	annotation not available	0.997
CDC6	GMNN	ENSCAPP00000018679	ENSCAPP00000011728	Cell division cycle 6.	Geminin DNA replication inhibitor.	0.883
CDC6	MCM2	ENSCAPP00000018679	ENSCAPP00000003876	Cell division cycle 6.	Minichromosome maintenance complex component 2.	0.998
CDC6	MCM3	ENSCAPP00000018679	ENSCAPP00000013580	Cell division cycle 6.	Minichromosome maintenance complex component 3.	0.998
CDC6	MCM6	ENSCAPP00000018679	ENSCAPP00000000980	Cell division cycle 6.	Minichromosome maintenance complex component 6.	0.996
CDC6	ORC1	ENSCAPP00000018679	ENSCAPP00000000938	Cell division cycle 6.	Origin recognition complex subunit 1.	0.999
CDC6	ORC4	ENSCAPP00000018679	ENSCAPP00000004225	Cell division cycle 6.	Origin recognition complex subunit 4.	0.997
CDT1	CDC6	ENSCAPP00000003853	ENSCAPP00000018679	Chromatin licensing and DNA replication factor 1.	Cell division cycle 6.	0.999
CDT1	ENSCAPP00000002903	ENSCAPP00000003853	ENSCAPP00000002903	Chromatin licensing and DNA replication factor 1.	annotation not available	0.999
CDT1	ENSCAPP00000009470	ENSCAPP00000003853	ENSCAPP00000009470	Chromatin licensing and DNA replication factor 1.	annotation not available	0.999
CDT1	ENSCAPP00000013166	ENSCAPP00000003853	ENSCAPP00000013166	Chromatin licensing and DNA replication factor 1.	annotation not available	0.999
CDT1	GMNN	ENSCAPP00000003853	ENSCAPP00000011728	Chromatin licensing and DNA replication factor 1.	Geminin DNA replication inhibitor.	0.999
CDT1	MCM2	ENSCAPP00000003853	ENSCAPP00000003876	Chromatin licensing and DNA replication factor 1.	Minichromosome maintenance complex component 2.	0.999
CDT1	MCM3	ENSCAPP00000003853	ENSCAPP00000013580	Chromatin licensing and DNA replication factor 1.	Minichromosome maintenance complex component 3.	0.999
CDT1	MCM6	ENSCAPP00000003853	ENSCAPP00000000980	Chromatin licensing and DNA replication factor 1.	Minichromosome maintenance complex component 6.	0.999
CDT1	ORC1	ENSCAPP00000003853	ENSCAPP00000000938	Chromatin licensing and DNA replication factor 1.	Origin recognition complex subunit 1.	0.999
CDT1	ORC4	ENSCAPP00000003853	ENSCAPP00000004225	Chromatin licensing and DNA replication factor 1.	Origin recognition complex subunit 4.	0.997