GC protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GC

GC vitamin D binding protein. (371 aa)

Predicted Functional Partners:

CUBN

0.977

ENSCAPP00000017807

0.944

AMBP

0.933

HPX

0.920

TTR

0.904

F2

0.878

FGB

0.873

SERPINC1

0.868

CDCP2

0.853

FAM126A

0.808

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMBP	ENSCAPP00000017807	ENSCAPP00000011001	ENSCAPP00000017807	Alpha-1-microglobulin/bikunin precursor.	annotation not available	0.970
AMBP	F2	ENSCAPP00000011001	ENSCAPP00000013583	Alpha-1-microglobulin/bikunin precursor.	Coagulation factor II, thrombin.	0.961
AMBP	FGB	ENSCAPP00000011001	ENSCAPP00000001554	Alpha-1-microglobulin/bikunin precursor.	Fibrinogen beta chain.	0.881
AMBP	GC	ENSCAPP00000011001	ENSCAPP00000003870	Alpha-1-microglobulin/bikunin precursor.	GC vitamin D binding protein.	0.933
AMBP	HPX	ENSCAPP00000011001	ENSCAPP00000018072	Alpha-1-microglobulin/bikunin precursor.	Hemopexin.	0.879
AMBP	SERPINC1	ENSCAPP00000011001	ENSCAPP00000014199	Alpha-1-microglobulin/bikunin precursor.	Serpin family C member 1.	0.898
AMBP	TTR	ENSCAPP00000011001	ENSCAPP00000011629	Alpha-1-microglobulin/bikunin precursor.	Transthyretin.	0.401
CDCP2	GC	ENSCAPP00000011878	ENSCAPP00000003870	CUB domain containing protein 2.	GC vitamin D binding protein.	0.853
CUBN	GC	ENSCAPP00000000669	ENSCAPP00000003870	Cubilin.	GC vitamin D binding protein.	0.977
ENSCAPP00000017807	AMBP	ENSCAPP00000017807	ENSCAPP00000011001	annotation not available	Alpha-1-microglobulin/bikunin precursor.	0.970
ENSCAPP00000017807	F2	ENSCAPP00000017807	ENSCAPP00000013583	annotation not available	Coagulation factor II, thrombin.	0.981
ENSCAPP00000017807	FGB	ENSCAPP00000017807	ENSCAPP00000001554	annotation not available	Fibrinogen beta chain.	0.953
ENSCAPP00000017807	GC	ENSCAPP00000017807	ENSCAPP00000003870	annotation not available	GC vitamin D binding protein.	0.944
ENSCAPP00000017807	HPX	ENSCAPP00000017807	ENSCAPP00000018072	annotation not available	Hemopexin.	0.818
ENSCAPP00000017807	SERPINC1	ENSCAPP00000017807	ENSCAPP00000014199	annotation not available	Serpin family C member 1.	0.866
ENSCAPP00000017807	TTR	ENSCAPP00000017807	ENSCAPP00000011629	annotation not available	Transthyretin.	0.792
F2	AMBP	ENSCAPP00000013583	ENSCAPP00000011001	Coagulation factor II, thrombin.	Alpha-1-microglobulin/bikunin precursor.	0.961
F2	ENSCAPP00000017807	ENSCAPP00000013583	ENSCAPP00000017807	Coagulation factor II, thrombin.	annotation not available	0.981
F2	FGB	ENSCAPP00000013583	ENSCAPP00000001554	Coagulation factor II, thrombin.	Fibrinogen beta chain.	0.995
F2	GC	ENSCAPP00000013583	ENSCAPP00000003870	Coagulation factor II, thrombin.	GC vitamin D binding protein.	0.878