MCM2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

MCM2

Minichromosome maintenance complex component 2. (884 aa)

Predicted Functional Partners:

ORC1

0.999

CDC45

0.999

MCM6

0.999

ENSCAPP00000002903

0.999

CDT1

0.999

ENSCAPP00000004672

0.999

ENSCAPP00000009470

0.999

ENSCAPP00000013166

0.999

GINS4

0.999

MCM3

0.999

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC45	CDT1	ENSCAPP00000000963	ENSCAPP00000003853	Cell division cycle 45.	Chromatin licensing and DNA replication factor 1.	0.993
CDC45	ENSCAPP00000002903	ENSCAPP00000000963	ENSCAPP00000002903	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSCAPP00000004672	ENSCAPP00000000963	ENSCAPP00000004672	Cell division cycle 45.	annotation not available	0.669
CDC45	ENSCAPP00000009470	ENSCAPP00000000963	ENSCAPP00000009470	Cell division cycle 45.	annotation not available	0.999
CDC45	ENSCAPP00000013166	ENSCAPP00000000963	ENSCAPP00000013166	Cell division cycle 45.	annotation not available	0.999
CDC45	GINS4	ENSCAPP00000000963	ENSCAPP00000013320	Cell division cycle 45.	GINS complex subunit 4.	0.999
CDC45	MCM2	ENSCAPP00000000963	ENSCAPP00000003876	Cell division cycle 45.	Minichromosome maintenance complex component 2.	0.999
CDC45	MCM3	ENSCAPP00000000963	ENSCAPP00000013580	Cell division cycle 45.	Minichromosome maintenance complex component 3.	0.999
CDC45	MCM6	ENSCAPP00000000963	ENSCAPP00000000980	Cell division cycle 45.	Minichromosome maintenance complex component 6.	0.999
CDC45	ORC1	ENSCAPP00000000963	ENSCAPP00000000938	Cell division cycle 45.	Origin recognition complex subunit 1.	0.996
CDT1	CDC45	ENSCAPP00000003853	ENSCAPP00000000963	Chromatin licensing and DNA replication factor 1.	Cell division cycle 45.	0.993
CDT1	ENSCAPP00000002903	ENSCAPP00000003853	ENSCAPP00000002903	Chromatin licensing and DNA replication factor 1.	annotation not available	0.999
CDT1	ENSCAPP00000004672	ENSCAPP00000003853	ENSCAPP00000004672	Chromatin licensing and DNA replication factor 1.	annotation not available	0.834
CDT1	ENSCAPP00000009470	ENSCAPP00000003853	ENSCAPP00000009470	Chromatin licensing and DNA replication factor 1.	annotation not available	0.999
CDT1	ENSCAPP00000013166	ENSCAPP00000003853	ENSCAPP00000013166	Chromatin licensing and DNA replication factor 1.	annotation not available	0.999
CDT1	GINS4	ENSCAPP00000003853	ENSCAPP00000013320	Chromatin licensing and DNA replication factor 1.	GINS complex subunit 4.	0.649
CDT1	MCM2	ENSCAPP00000003853	ENSCAPP00000003876	Chromatin licensing and DNA replication factor 1.	Minichromosome maintenance complex component 2.	0.999
CDT1	MCM3	ENSCAPP00000003853	ENSCAPP00000013580	Chromatin licensing and DNA replication factor 1.	Minichromosome maintenance complex component 3.	0.999
CDT1	MCM6	ENSCAPP00000003853	ENSCAPP00000000980	Chromatin licensing and DNA replication factor 1.	Minichromosome maintenance complex component 6.	0.999
CDT1	ORC1	ENSCAPP00000003853	ENSCAPP00000000938	Chromatin licensing and DNA replication factor 1.	Origin recognition complex subunit 1.	0.999