STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003907annotation not available (312 aa)    
Predicted Functional Partners:
VPS45
Vacuolar protein sorting 45 homolog.
   
 
  0.885
ATG5
Autophagy related 5.
    
 0.836
SRL
Sarcalumenin.
     
 0.835
EHD3
EH domain containing 3.
     
 0.835
EHD2
EH domain containing 2.
     
 0.835
EHD1
EH domain containing 1.
     
 0.835
EHD4
EH domain containing 4.
     
 0.835
ATG12
Autophagy related 12.
    
 0.750
RUBCN
Rubicon autophagy regulator.
   
 0.742
ENSCAPP00000000047
annotation not available
   
 
  0.724
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.