Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS26BVPS26, retromer complex component B. (310 aa)    
Predicted Functional Partners:
SNX27
Sorting nexin 27.
   
 0.999
VPS35
VPS35 retromer complex component.
   
 0.999
SNX1
Sorting nexin 1.
   
 0.999
ENSCAPP00000018579
annotation not available
   
 0.999
VPS26A
VPS26, retromer complex component A.
   
 0.998
ENSCAPP00000012690
annotation not available
    
 0.997
SNX5
Sorting nexin 5.
   
 0.990
RAB7A
RAB7A, member RAS oncogene family.
   
 0.989
SNX6
Sorting nexin 6.
   
 0.979
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
 0.969
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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