STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B1Splicing factor 3b subunit 1. (1306 aa)    
Predicted Functional Partners:
SF3B3
Splicing factor 3b subunit 3.
   
 0.999
ENSCAPP00000001654
annotation not available
    
 0.999
SF3B2
Splicing factor 3b subunit 2.
   
 0.999
SF3B4
Splicing factor 3b subunit 4.
    
 0.999
PHF5A
PHD finger protein 5A.
   
 0.999
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.999
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 0.999
ENSCAPP00000009270
annotation not available
   
 0.999
DDX42
DEAD-box helicase 42.
   
 0.999
PRPF6
pre-mRNA processing factor 6.
   
 0.999
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.