ENSCAPP00000003947 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000003947

annotation not available (131 aa)

Predicted Functional Partners:

ENSCAPP00000001550

0.986

H2BC18

0.980

H2AZ2

0.947

HDAC7

0.939

MYSM1

0.936

HDAC3

0.936

HDAC1

0.936

HDAC2

0.936

ENSCAPP00000002314

0.934

ENSCAPP00000006118

0.934

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001550	ENSCAPP00000002314	ENSCAPP00000001550	ENSCAPP00000002314	annotation not available	annotation not available	0.779
ENSCAPP00000001550	ENSCAPP00000003947	ENSCAPP00000001550	ENSCAPP00000003947	annotation not available	annotation not available	0.986
ENSCAPP00000001550	ENSCAPP00000006118	ENSCAPP00000001550	ENSCAPP00000006118	annotation not available	annotation not available	0.779
ENSCAPP00000001550	H2AZ2	ENSCAPP00000001550	ENSCAPP00000015311	annotation not available	H2A.Z variant histone 2.	0.984
ENSCAPP00000001550	H2BC18	ENSCAPP00000001550	ENSCAPP00000012296	annotation not available	H2B clustered histone 18.	0.996
ENSCAPP00000001550	HDAC1	ENSCAPP00000001550	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.945
ENSCAPP00000001550	HDAC2	ENSCAPP00000001550	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.928
ENSCAPP00000001550	HDAC3	ENSCAPP00000001550	ENSCAPP00000010620	annotation not available	Histone deacetylase 3.	0.920
ENSCAPP00000001550	HDAC7	ENSCAPP00000001550	ENSCAPP00000017937	annotation not available	Histone deacetylase 7.	0.779
ENSCAPP00000001550	MYSM1	ENSCAPP00000001550	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.945
ENSCAPP00000002314	ENSCAPP00000001550	ENSCAPP00000002314	ENSCAPP00000001550	annotation not available	annotation not available	0.779
ENSCAPP00000002314	ENSCAPP00000003947	ENSCAPP00000002314	ENSCAPP00000003947	annotation not available	annotation not available	0.934
ENSCAPP00000002314	H2AZ2	ENSCAPP00000002314	ENSCAPP00000015311	annotation not available	H2A.Z variant histone 2.	0.952
ENSCAPP00000002314	H2BC18	ENSCAPP00000002314	ENSCAPP00000012296	annotation not available	H2B clustered histone 18.	0.937
ENSCAPP00000002314	HDAC1	ENSCAPP00000002314	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.738
ENSCAPP00000002314	HDAC2	ENSCAPP00000002314	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.738
ENSCAPP00000002314	HDAC3	ENSCAPP00000002314	ENSCAPP00000010620	annotation not available	Histone deacetylase 3.	0.978
ENSCAPP00000002314	HDAC7	ENSCAPP00000002314	ENSCAPP00000017937	annotation not available	Histone deacetylase 7.	0.892
ENSCAPP00000002314	MYSM1	ENSCAPP00000002314	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.512
ENSCAPP00000003947	ENSCAPP00000001550	ENSCAPP00000003947	ENSCAPP00000001550	annotation not available	annotation not available	0.986