Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CASQ2Calsequestrin 2. (335 aa)    
Predicted Functional Partners:
RYR2
Ryanodine receptor 2.
   
 0.988
ENSCAPP00000011428
annotation not available
   
 0.974
RYR1
Ryanodine receptor 1.
   
 0.961
RYR3
Ryanodine receptor 3.
   
 0.942
SRL
Sarcalumenin.
   
 0.936
TNNT2
Troponin T2, cardiac type.
   
 
 0.914
CSRP3
Cysteine and glycine rich protein 3.
   
 
 0.911
MYOZ2
Myozenin 2.
   
 
 0.907
TNNC1
Troponin C1, slow skeletal and cardiac type.
   
 0.893
ENSCAPP00000015287
annotation not available
   
 0.884
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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