STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAT1Vesicle amine transport 1. (263 aa)    
Predicted Functional Partners:
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
 0.826
ENSCAPP00000003358
annotation not available
  
 0.822
ENSCAPP00000017181
annotation not available
   
 0.691
ENSCAPP00000015411
annotation not available
    
 0.690
DERA
Deoxyribose-phosphate aldolase.
    
 0.677
ENSCAPP00000016271
annotation not available
  
 
 0.675
ATP5F1D
ATP synthase F1 subunit delta.
    
 0.646
ENSCAPP00000004940
annotation not available
  
 0.628
ENSCAPP00000006987
annotation not available
  
 0.628
SORD
Sorbitol dehydrogenase.
  
 
 0.617
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.