Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VAT1Vesicle amine transport 1. (263 aa)    
Predicted Functional Partners:
ENSCAPP00000012429
annotation not available
    
   0.778
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
 0.772
DERA
Deoxyribose-phosphate aldolase.
    
 0.661
ENSCAPP00000003358
annotation not available
   
 0.655
ALDH5A1
Aldehyde dehydrogenase 5 family member A1.
   
 0.654
ENSCAPP00000015411
annotation not available
    
 0.643
UBLCP1
Ubiquitin like domain containing CTD phosphatase 1.
    
 
 0.602
ENSCAPP00000016271
annotation not available
  
 0.584
ACSF2
acyl-CoA synthetase family member 2.
   
 0.576
DIP2A
Disco interacting protein 2 homolog A.
   
 0.576
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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