Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBTD1Ubiquitin domain containing 1. (209 aa)    
Predicted Functional Partners:
UBTD2
Ubiquitin domain containing 2.
   
    0.934
ENSCAPP00000000972
annotation not available
    
 
 0.916
ENSCAPP00000008606
annotation not available
    
 
 0.916
TRIM39
Tripartite motif containing 39.
    
   0.879
UBE2D4
Ubiquitin conjugating enzyme E2 D4 (putative).
    
 
 0.826
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
 
 0.789
IL12B
Interleukin 12B.
     
  0.678
IL6ST
Interleukin 6 signal transducer.
     
  0.677
ENSCAPP00000016264
annotation not available
    
   0.650
ENSCAPP00000004313
annotation not available
    
 
 0.604
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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