SBDS protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SBDS

SBDS ribosome maturation factor. (164 aa)

Predicted Functional Partners:

EFL1

0.989

MRTO4

0.919

ENSCAPP00000009878

0.885

ENSCAPP00000016796

0.885

ENSCAPP00000012399

0.870

ENSCAPP00000001460

0.821

MYH13

0.821

TIGAR

0.819

ENSCAPP00000015632

0.794

ENSCAPP00000018178

0.794

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFL1	ENSCAPP00000001460	ENSCAPP00000018584	ENSCAPP00000001460	Elongation factor like GTPase 1.	annotation not available	0.607
EFL1	ENSCAPP00000009878	ENSCAPP00000018584	ENSCAPP00000009878	Elongation factor like GTPase 1.	annotation not available	0.917
EFL1	ENSCAPP00000012399	ENSCAPP00000018584	ENSCAPP00000012399	Elongation factor like GTPase 1.	annotation not available	0.800
EFL1	ENSCAPP00000015632	ENSCAPP00000018584	ENSCAPP00000015632	Elongation factor like GTPase 1.	annotation not available	0.813
EFL1	ENSCAPP00000016796	ENSCAPP00000018584	ENSCAPP00000016796	Elongation factor like GTPase 1.	annotation not available	0.917
EFL1	ENSCAPP00000018178	ENSCAPP00000018584	ENSCAPP00000018178	Elongation factor like GTPase 1.	annotation not available	0.813
EFL1	MRTO4	ENSCAPP00000018584	ENSCAPP00000011622	Elongation factor like GTPase 1.	MRT4 homolog, ribosome maturation factor.	0.849
EFL1	SBDS	ENSCAPP00000018584	ENSCAPP00000003991	Elongation factor like GTPase 1.	SBDS ribosome maturation factor.	0.989
ENSCAPP00000001460	EFL1	ENSCAPP00000001460	ENSCAPP00000018584	annotation not available	Elongation factor like GTPase 1.	0.607
ENSCAPP00000001460	ENSCAPP00000009878	ENSCAPP00000001460	ENSCAPP00000009878	annotation not available	annotation not available	0.979
ENSCAPP00000001460	ENSCAPP00000012399	ENSCAPP00000001460	ENSCAPP00000012399	annotation not available	annotation not available	0.938
ENSCAPP00000001460	ENSCAPP00000015632	ENSCAPP00000001460	ENSCAPP00000015632	annotation not available	annotation not available	0.933
ENSCAPP00000001460	ENSCAPP00000016796	ENSCAPP00000001460	ENSCAPP00000016796	annotation not available	annotation not available	0.979
ENSCAPP00000001460	ENSCAPP00000018178	ENSCAPP00000001460	ENSCAPP00000018178	annotation not available	annotation not available	0.933
ENSCAPP00000001460	MRTO4	ENSCAPP00000001460	ENSCAPP00000011622	annotation not available	MRT4 homolog, ribosome maturation factor.	0.998
ENSCAPP00000001460	SBDS	ENSCAPP00000001460	ENSCAPP00000003991	annotation not available	SBDS ribosome maturation factor.	0.821
ENSCAPP00000009878	EFL1	ENSCAPP00000009878	ENSCAPP00000018584	annotation not available	Elongation factor like GTPase 1.	0.917
ENSCAPP00000009878	ENSCAPP00000001460	ENSCAPP00000009878	ENSCAPP00000001460	annotation not available	annotation not available	0.979
ENSCAPP00000009878	ENSCAPP00000012399	ENSCAPP00000009878	ENSCAPP00000012399	annotation not available	annotation not available	0.857
ENSCAPP00000009878	ENSCAPP00000015632	ENSCAPP00000009878	ENSCAPP00000015632	annotation not available	annotation not available	0.857