ENSCAPP00000004002 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004002

annotation not available (299 aa)

Predicted Functional Partners:

ENSCAPP00000004004

0.973

SOX6

0.779

CTNNB1

0.740

ENSCAPP00000008218

0.713

BPTF

0.707

TRIP12

0.662

SOX10

0.639

SOX13

0.627

TCF7

0.617

CEP85

0.609

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPTF	ENSCAPP00000004002	ENSCAPP00000010189	ENSCAPP00000004002	Bromodomain PHD finger transcription factor.	annotation not available	0.707
BPTF	ENSCAPP00000004004	ENSCAPP00000010189	ENSCAPP00000004004	Bromodomain PHD finger transcription factor.	annotation not available	0.707
BPTF	ENSCAPP00000008218	ENSCAPP00000010189	ENSCAPP00000008218	Bromodomain PHD finger transcription factor.	annotation not available	0.968
BPTF	SOX13	ENSCAPP00000010189	ENSCAPP00000016176	Bromodomain PHD finger transcription factor.	SRY-box transcription factor 13.	0.707
BPTF	SOX6	ENSCAPP00000010189	ENSCAPP00000001647	Bromodomain PHD finger transcription factor.	SRY-box transcription factor 6.	0.707
CEP85	ENSCAPP00000004002	ENSCAPP00000007722	ENSCAPP00000004002	Centrosomal protein 85.	annotation not available	0.609
CEP85	SOX13	ENSCAPP00000007722	ENSCAPP00000016176	Centrosomal protein 85.	SRY-box transcription factor 13.	0.642
CTNNB1	ENSCAPP00000004002	ENSCAPP00000013273	ENSCAPP00000004002	Catenin beta 1.	annotation not available	0.740
CTNNB1	ENSCAPP00000004004	ENSCAPP00000013273	ENSCAPP00000004004	Catenin beta 1.	annotation not available	0.731
CTNNB1	SOX10	ENSCAPP00000013273	ENSCAPP00000012264	Catenin beta 1.	SRY-box transcription factor 10.	0.796
CTNNB1	SOX13	ENSCAPP00000013273	ENSCAPP00000016176	Catenin beta 1.	SRY-box transcription factor 13.	0.607
CTNNB1	SOX6	ENSCAPP00000013273	ENSCAPP00000001647	Catenin beta 1.	SRY-box transcription factor 6.	0.797
CTNNB1	TCF7	ENSCAPP00000013273	ENSCAPP00000015346	Catenin beta 1.	Transcription factor 7.	0.972
ENSCAPP00000004002	BPTF	ENSCAPP00000004002	ENSCAPP00000010189	annotation not available	Bromodomain PHD finger transcription factor.	0.707
ENSCAPP00000004002	CEP85	ENSCAPP00000004002	ENSCAPP00000007722	annotation not available	Centrosomal protein 85.	0.609
ENSCAPP00000004002	CTNNB1	ENSCAPP00000004002	ENSCAPP00000013273	annotation not available	Catenin beta 1.	0.740
ENSCAPP00000004002	ENSCAPP00000004004	ENSCAPP00000004002	ENSCAPP00000004004	annotation not available	annotation not available	0.973
ENSCAPP00000004002	ENSCAPP00000008218	ENSCAPP00000004002	ENSCAPP00000008218	annotation not available	annotation not available	0.713
ENSCAPP00000004002	SOX10	ENSCAPP00000004002	ENSCAPP00000012264	annotation not available	SRY-box transcription factor 10.	0.639
ENSCAPP00000004002	SOX13	ENSCAPP00000004002	ENSCAPP00000016176	annotation not available	SRY-box transcription factor 13.	0.627