Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004002annotation not available (299 aa)    
Predicted Functional Partners:
ENSCAPP00000004004
annotation not available
 
 
 0.996
SOX6
SRY-box transcription factor 6.
   
 
 0.992
SOX13
SRY-box transcription factor 13.
    
 
 0.962
CEP85
Centrosomal protein 85.
    
   0.959
ARID5A
AT-rich interaction domain 5A.
    
 
 0.812
TRIP12
Thyroid hormone receptor interactor 12.
    
 
 0.795
ZBTB20
Zinc finger and BTB domain containing 20.
    
 
 0.763
ENSCAPP00000010310
annotation not available
    
 
 0.690
ETNK1
Ethanolamine kinase 1.
      
 0.672
COL2A1
Collagen type II alpha 1 chain.
    
 
 0.669
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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