Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004004annotation not available (392 aa)    
Predicted Functional Partners:
ENSCAPP00000004002
annotation not available
 
 
 0.996
CTNNB1
Catenin beta 1.
   
 0.815
SOX13
SRY-box transcription factor 13.
    
 
 0.813
TRIP12
Thyroid hormone receptor interactor 12.
    
 
 0.795
JUP
Junction plakoglobin.
   
 0.669
BPTF
Bromodomain PHD finger transcription factor.
    
  0.649
ENSCAPP00000008218
annotation not available
    
  0.596
DMRT1
Doublesex and mab-3 related transcription factor 1.
    
 
 0.525
SOX15
SRY-box transcription factor 15.
    
 0.523
UCK1
Uridine-cytidine kinase 1.
   
 0.498
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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