Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRPS1Transcriptional repressor GATA binding 1. (1281 aa)    
Predicted Functional Partners:
HDAC2
Histone deacetylase 2.
    
 0.969
ENSCAPP00000015419
annotation not available
    
   0.950
GATAD2B
GATA zinc finger domain containing 2B.
    
 
 0.919
GATAD2A
GATA zinc finger domain containing 2A.
    
   0.908
ENSCAPP00000009010
annotation not available
    
 
 0.887
HDAC1
Histone deacetylase 1.
    
 0.886
ENSCAPP00000005542
annotation not available
    
   0.840
MTA2
Metastasis associated 1 family member 2.
    
   0.839
CHD3
Chromodomain helicase DNA binding protein 3.
   
 0.832
ENSCAPP00000007369
annotation not available
    
   0.825
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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