Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004029annotation not available (70 aa)    
Predicted Functional Partners:
SRP54
Signal recognition particle 54.
    
 0.999
ENSCAPP00000013443
annotation not available
   
 0.999
SRP68
Signal recognition particle 68.
    
 0.999
SRP72
Signal recognition particle 72.
    
 0.999
ENSCAPP00000012429
annotation not available
    
   0.911
RPL3
Ribosomal protein L3.
   
   0.880
YBX1
Y-box binding protein 1.
   
   0.873
ENSCAPP00000012651
annotation not available
   
   0.859
SKP1
S-phase kinase associated protein 1.
   
    0.838
ENSCAPP00000009519
annotation not available
   
    0.834
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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