ITGB6 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ITGB6

Integrin subunit beta 6. (758 aa)

Predicted Functional Partners:

ITGAV

0.998

ENSCAPP00000016591

0.996

ITGA4

0.995

ITGA1

0.995

ITGA10

0.995

ITGA11

0.994

ENSCAPP00000013226

0.993

ITGAL

0.993

ITGAM

0.993

ITGA5

0.987

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000013226	ENSCAPP00000016591	ENSCAPP00000013226	ENSCAPP00000016591	annotation not available	annotation not available	0.961
ENSCAPP00000013226	ITGA1	ENSCAPP00000013226	ENSCAPP00000011360	annotation not available	Integrin subunit alpha 1.	0.942
ENSCAPP00000013226	ITGA10	ENSCAPP00000013226	ENSCAPP00000017566	annotation not available	Integrin subunit alpha 10.	0.991
ENSCAPP00000013226	ITGA11	ENSCAPP00000013226	ENSCAPP00000015066	annotation not available	Integrin subunit alpha 11.	0.942
ENSCAPP00000013226	ITGA4	ENSCAPP00000013226	ENSCAPP00000007913	annotation not available	Integrin subunit alpha 4.	0.991
ENSCAPP00000013226	ITGA5	ENSCAPP00000013226	ENSCAPP00000008342	annotation not available	Integrin subunit alpha 5.	0.979
ENSCAPP00000013226	ITGAL	ENSCAPP00000013226	ENSCAPP00000014751	annotation not available	Integrin subunit alpha L.	0.992
ENSCAPP00000013226	ITGAM	ENSCAPP00000013226	ENSCAPP00000016232	annotation not available	Integrin subunit alpha M.	0.938
ENSCAPP00000013226	ITGAV	ENSCAPP00000013226	ENSCAPP00000009667	annotation not available	Integrin subunit alpha V.	0.944
ENSCAPP00000013226	ITGB6	ENSCAPP00000013226	ENSCAPP00000004031	annotation not available	Integrin subunit beta 6.	0.993
ENSCAPP00000016591	ENSCAPP00000013226	ENSCAPP00000016591	ENSCAPP00000013226	annotation not available	annotation not available	0.961
ENSCAPP00000016591	ITGA1	ENSCAPP00000016591	ENSCAPP00000011360	annotation not available	Integrin subunit alpha 1.	0.991
ENSCAPP00000016591	ITGA10	ENSCAPP00000016591	ENSCAPP00000017566	annotation not available	Integrin subunit alpha 10.	0.991
ENSCAPP00000016591	ITGA11	ENSCAPP00000016591	ENSCAPP00000015066	annotation not available	Integrin subunit alpha 11.	0.991
ENSCAPP00000016591	ITGA4	ENSCAPP00000016591	ENSCAPP00000007913	annotation not available	Integrin subunit alpha 4.	0.991
ENSCAPP00000016591	ITGA5	ENSCAPP00000016591	ENSCAPP00000008342	annotation not available	Integrin subunit alpha 5.	0.981
ENSCAPP00000016591	ITGAL	ENSCAPP00000016591	ENSCAPP00000014751	annotation not available	Integrin subunit alpha L.	0.991
ENSCAPP00000016591	ITGAM	ENSCAPP00000016591	ENSCAPP00000016232	annotation not available	Integrin subunit alpha M.	0.991
ENSCAPP00000016591	ITGAV	ENSCAPP00000016591	ENSCAPP00000009667	annotation not available	Integrin subunit alpha V.	0.992
ENSCAPP00000016591	ITGB6	ENSCAPP00000016591	ENSCAPP00000004031	annotation not available	Integrin subunit beta 6.	0.996