PXDC1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

PXDC1

PX domain containing 1. (145 aa)

Predicted Functional Partners:

LIN7C

0.905

LIN7B

0.839

RABGAP1

0.721

ENSCAPP00000014096

0.721

KLHL29

0.684

ENSCAPP00000016599

0.622

ENSCAPP00000004362

0.621

ENSCAPP00000010351

0.621

DCP1B

0.564

DOK6

0.538

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCP1B	PXDC1	ENSCAPP00000010896	ENSCAPP00000004046	Decapping mRNA 1B.	PX domain containing 1.	0.564
DOK6	PXDC1	ENSCAPP00000005449	ENSCAPP00000004046	Docking protein 6.	PX domain containing 1.	0.538
ENSCAPP00000004362	ENSCAPP00000010351	ENSCAPP00000004362	ENSCAPP00000010351	annotation not available	annotation not available	0.759
ENSCAPP00000004362	LIN7B	ENSCAPP00000004362	ENSCAPP00000011744	annotation not available	Lin-7 homolog B, crumbs cell polarity complex component.	0.913
ENSCAPP00000004362	LIN7C	ENSCAPP00000004362	ENSCAPP00000000264	annotation not available	Lin-7 homolog C, crumbs cell polarity complex component.	0.946
ENSCAPP00000004362	PXDC1	ENSCAPP00000004362	ENSCAPP00000004046	annotation not available	PX domain containing 1.	0.621
ENSCAPP00000010351	ENSCAPP00000004362	ENSCAPP00000010351	ENSCAPP00000004362	annotation not available	annotation not available	0.759
ENSCAPP00000010351	LIN7B	ENSCAPP00000010351	ENSCAPP00000011744	annotation not available	Lin-7 homolog B, crumbs cell polarity complex component.	0.891
ENSCAPP00000010351	LIN7C	ENSCAPP00000010351	ENSCAPP00000000264	annotation not available	Lin-7 homolog C, crumbs cell polarity complex component.	0.946
ENSCAPP00000010351	PXDC1	ENSCAPP00000010351	ENSCAPP00000004046	annotation not available	PX domain containing 1.	0.621
ENSCAPP00000014096	ENSCAPP00000016599	ENSCAPP00000014096	ENSCAPP00000016599	annotation not available	annotation not available	0.899
ENSCAPP00000014096	PXDC1	ENSCAPP00000014096	ENSCAPP00000004046	annotation not available	PX domain containing 1.	0.721
ENSCAPP00000016599	ENSCAPP00000014096	ENSCAPP00000016599	ENSCAPP00000014096	annotation not available	annotation not available	0.899
ENSCAPP00000016599	PXDC1	ENSCAPP00000016599	ENSCAPP00000004046	annotation not available	PX domain containing 1.	0.622
KLHL29	PXDC1	ENSCAPP00000007392	ENSCAPP00000004046	Kelch like family member 29.	PX domain containing 1.	0.684
LIN7B	ENSCAPP00000004362	ENSCAPP00000011744	ENSCAPP00000004362	Lin-7 homolog B, crumbs cell polarity complex component.	annotation not available	0.913
LIN7B	ENSCAPP00000010351	ENSCAPP00000011744	ENSCAPP00000010351	Lin-7 homolog B, crumbs cell polarity complex component.	annotation not available	0.891
LIN7B	PXDC1	ENSCAPP00000011744	ENSCAPP00000004046	Lin-7 homolog B, crumbs cell polarity complex component.	PX domain containing 1.	0.839
LIN7C	ENSCAPP00000004362	ENSCAPP00000000264	ENSCAPP00000004362	Lin-7 homolog C, crumbs cell polarity complex component.	annotation not available	0.946
LIN7C	ENSCAPP00000010351	ENSCAPP00000000264	ENSCAPP00000010351	Lin-7 homolog C, crumbs cell polarity complex component.	annotation not available	0.946