CSTB protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CSTB

Cystatin B. (76 aa)

Predicted Functional Partners:

ENSCAPP00000009147

0.523

PUM2

0.523

CTSB

0.509

ENSCAPP00000010097

0.456

ENSCAPP00000015140

0.439

CTSZ

0.416

ENSCAPP00000015540

0.410

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSTB	CTSB	ENSCAPP00000004055	ENSCAPP00000001034	Cystatin B.	Cathepsin B.	0.509
CSTB	CTSZ	ENSCAPP00000004055	ENSCAPP00000004745	Cystatin B.	Cathepsin Z.	0.416
CSTB	ENSCAPP00000009147	ENSCAPP00000004055	ENSCAPP00000009147	Cystatin B.	annotation not available	0.523
CSTB	ENSCAPP00000010097	ENSCAPP00000004055	ENSCAPP00000010097	Cystatin B.	annotation not available	0.456
CSTB	ENSCAPP00000015140	ENSCAPP00000004055	ENSCAPP00000015140	Cystatin B.	annotation not available	0.439
CSTB	ENSCAPP00000015540	ENSCAPP00000004055	ENSCAPP00000015540	Cystatin B.	annotation not available	0.410
CSTB	PUM2	ENSCAPP00000004055	ENSCAPP00000017197	Cystatin B.	Pumilio RNA binding family member 2.	0.523
CTSB	CSTB	ENSCAPP00000001034	ENSCAPP00000004055	Cathepsin B.	Cystatin B.	0.509
CTSB	CTSZ	ENSCAPP00000001034	ENSCAPP00000004745	Cathepsin B.	Cathepsin Z.	0.819
CTSB	ENSCAPP00000010097	ENSCAPP00000001034	ENSCAPP00000010097	Cathepsin B.	annotation not available	0.824
CTSB	ENSCAPP00000015140	ENSCAPP00000001034	ENSCAPP00000015140	Cathepsin B.	annotation not available	0.993
CTSB	ENSCAPP00000015540	ENSCAPP00000001034	ENSCAPP00000015540	Cathepsin B.	annotation not available	0.947
CTSZ	CSTB	ENSCAPP00000004745	ENSCAPP00000004055	Cathepsin Z.	Cystatin B.	0.416
CTSZ	CTSB	ENSCAPP00000004745	ENSCAPP00000001034	Cathepsin Z.	Cathepsin B.	0.819
CTSZ	ENSCAPP00000010097	ENSCAPP00000004745	ENSCAPP00000010097	Cathepsin Z.	annotation not available	0.709
CTSZ	ENSCAPP00000015140	ENSCAPP00000004745	ENSCAPP00000015140	Cathepsin Z.	annotation not available	0.931
CTSZ	ENSCAPP00000015540	ENSCAPP00000004745	ENSCAPP00000015540	Cathepsin Z.	annotation not available	0.736
ENSCAPP00000009147	CSTB	ENSCAPP00000009147	ENSCAPP00000004055	annotation not available	Cystatin B.	0.523
ENSCAPP00000009147	PUM2	ENSCAPP00000009147	ENSCAPP00000017197	annotation not available	Pumilio RNA binding family member 2.	0.902
ENSCAPP00000010097	CSTB	ENSCAPP00000010097	ENSCAPP00000004055	annotation not available	Cystatin B.	0.456