Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSTBCystatin B. (76 aa)    
Predicted Functional Partners:
CTSB
Cathepsin B.
   
 0.823
ENSCAPP00000009147
annotation not available
    
   0.809
PUM2
Pumilio RNA binding family member 2.
    
   0.809
ENSCAPP00000015140
annotation not available
   
 0.719
ENSCAPP00000010097
annotation not available
   
 0.700
SERPINE1
Serpin family E member 1.
     
  0.676
VTN
Vitronectin.
     
  0.676
ENSCAPP00000007551
annotation not available
     
 0.648
PRSS45P
Serine protease 45, pseudogene.
     
 0.648
CTSZ
Cathepsin Z.
   
 0.643
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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