STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004065annotation not available (257 aa)    
Predicted Functional Partners:
PRMT5
Protein arginine methyltransferase 5.
   
 0.994
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.991
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.986
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
    
 0.982
ENSCAPP00000001161
annotation not available
   
 0.971
ENSCAPP00000003884
annotation not available
   
 0.969
ENSCAPP00000010418
annotation not available
   
 0.969
ENSCAPP00000010480
annotation not available
   
 0.963
ENSCAPP00000016568
annotation not available
   
 0.963
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.942
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.