STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor 1. (977 aa)    
Predicted Functional Partners:
VPS54
VPS54 subunit of GARP complex.
   
 
 0.850
RAB6A
RAB6A, member RAS oncogene family.
    
 0.770
RAB6B
RAB6B, member RAS oncogene family.
    
 0.770
RAB34
RAB34, member RAS oncogene family.
    
 0.759
GCC1
GRIP and coiled-coil domain containing 1.
     
 0.725
ENSCAPP00000017221
annotation not available
     
 0.721
COG3
Component of oligomeric golgi complex 3.
   
 
 0.716
VPS51
VPS51 subunit of GARP complex.
     
 0.714
COG1
Component of oligomeric golgi complex 1.
     
 0.703
COG5
Component of oligomeric golgi complex 5.
     
 0.703
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.