Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor 1. (977 aa)    
Predicted Functional Partners:
ARFRP1
ADP ribosylation factor related protein 1.
     
 0.870
GCC1
GRIP and coiled-coil domain containing 1.
     
 0.862
VPS53
VPS53 subunit of GARP complex.
     
 0.849
VPS51
VPS51 subunit of GARP complex.
     
 0.834
VPS52
VPS52 subunit of GARP complex.
     
 0.830
ENSCAPP00000010670
annotation not available
      
 0.740
ENSCAPP00000014744
annotation not available
   
 0.694
POC1A
POC1 centriolar protein A.
      
 0.685
ENSCAPP00000004029
annotation not available
      
 0.680
TRIP12
Thyroid hormone receptor interactor 12.
      
 0.678
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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