Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD1Adenosylmethionine decarboxylase 1. (329 aa)    
Predicted Functional Partners:
SRM
Spermidine synthase.
  
 
 0.975
MAT2A
Methionine adenosyltransferase 2A.
   
 
 0.959
ENSCAPP00000002410
annotation not available
     
 0.949
MAT1A
Methionine adenosyltransferase 1A.
   
 
 0.948
ENSCAPP00000002499
annotation not available
  
 
 0.943
ENSCAPP00000007765
annotation not available
  
 
 0.943
MAT2B
Methionine adenosyltransferase 2B.
     
 0.927
DNMT1
DNA methyltransferase 1.
     
 0.912
DNMT3A
DNA methyltransferase 3 alpha.
     
  0.911
ODC1
Ornithine decarboxylase 1.
   
 
 0.908
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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