NAV3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NAV3

Neuron navigator 3. (2028 aa)

Predicted Functional Partners:

VPS9D1

0.855

CLMN

0.815

CSPG5

0.754

ENSCAPP00000007305

0.734

ENSCAPP00000012094

0.695

E2F7

0.687

CSRNP2

0.661

PTPRM

0.655

MAP2K4

0.654

SPTAN1

0.599

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLMN	NAV3	ENSCAPP00000005212	ENSCAPP00000004168	Calmin.	Neuron navigator 3.	0.815
CSPG5	NAV3	ENSCAPP00000007479	ENSCAPP00000004168	Chondroitin sulfate proteoglycan 5.	Neuron navigator 3.	0.754
CSRNP2	NAV3	ENSCAPP00000007959	ENSCAPP00000004168	Cysteine and serine rich nuclear protein 2.	Neuron navigator 3.	0.661
E2F7	NAV3	ENSCAPP00000001939	ENSCAPP00000004168	E2F transcription factor 7.	Neuron navigator 3.	0.687
E2F7	PTPRM	ENSCAPP00000001939	ENSCAPP00000001701	E2F transcription factor 7.	Protein tyrosine phosphatase receptor type M.	0.650
ENSCAPP00000007305	NAV3	ENSCAPP00000007305	ENSCAPP00000004168	annotation not available	Neuron navigator 3.	0.734
ENSCAPP00000012094	NAV3	ENSCAPP00000012094	ENSCAPP00000004168	annotation not available	Neuron navigator 3.	0.695
ENSCAPP00000012094	PTPRM	ENSCAPP00000012094	ENSCAPP00000001701	annotation not available	Protein tyrosine phosphatase receptor type M.	0.520
MAP2K4	NAV3	ENSCAPP00000018678	ENSCAPP00000004168	Mitogen-activated protein kinase kinase 4.	Neuron navigator 3.	0.654
NAV3	CLMN	ENSCAPP00000004168	ENSCAPP00000005212	Neuron navigator 3.	Calmin.	0.815
NAV3	CSPG5	ENSCAPP00000004168	ENSCAPP00000007479	Neuron navigator 3.	Chondroitin sulfate proteoglycan 5.	0.754
NAV3	CSRNP2	ENSCAPP00000004168	ENSCAPP00000007959	Neuron navigator 3.	Cysteine and serine rich nuclear protein 2.	0.661
NAV3	E2F7	ENSCAPP00000004168	ENSCAPP00000001939	Neuron navigator 3.	E2F transcription factor 7.	0.687
NAV3	ENSCAPP00000007305	ENSCAPP00000004168	ENSCAPP00000007305	Neuron navigator 3.	annotation not available	0.734
NAV3	ENSCAPP00000012094	ENSCAPP00000004168	ENSCAPP00000012094	Neuron navigator 3.	annotation not available	0.695
NAV3	MAP2K4	ENSCAPP00000004168	ENSCAPP00000018678	Neuron navigator 3.	Mitogen-activated protein kinase kinase 4.	0.654
NAV3	PTPRM	ENSCAPP00000004168	ENSCAPP00000001701	Neuron navigator 3.	Protein tyrosine phosphatase receptor type M.	0.655
NAV3	SPTAN1	ENSCAPP00000004168	ENSCAPP00000003587	Neuron navigator 3.	Spectrin alpha, non-erythrocytic 1.	0.599
NAV3	VPS9D1	ENSCAPP00000004168	ENSCAPP00000015361	Neuron navigator 3.	VPS9 domain containing 1.	0.855
PTPRM	E2F7	ENSCAPP00000001701	ENSCAPP00000001939	Protein tyrosine phosphatase receptor type M.	E2F transcription factor 7.	0.650