Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAF11SR-related CTD associated factor 11. (1355 aa)    
Predicted Functional Partners:
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 
 0.976
NME7
NME/NM23 family member 7.
    
   0.896
TUBGCP4
Tubulin gamma complex associated protein 4.
    
   0.878
ENSCAPP00000010940
annotation not available
   
  
 0.868
TUBGCP5
Tubulin gamma complex associated protein 5.
    
   0.861
ENSCAPP00000007170
annotation not available
    
   0.857
TUBGCP2
Tubulin gamma complex associated protein 2.
    
   0.853
ENSCAPP00000009016
annotation not available
   
  
 0.839
PDS5A
PDS5 cohesin associated factor A.
   
  
 0.839
TUBGCP6
Tubulin gamma complex associated protein 6.
    
   0.838
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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