STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF11SR-related CTD associated factor 11. (1355 aa)    
Predicted Functional Partners:
ENSCAPP00000010940
annotation not available
   
  
 0.758
ENSCAPP00000009016
annotation not available
   
    0.749
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 
 0.724
SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1.
   
    0.645
ENSCAPP00000007564
annotation not available
  
    0.623
PHIP
Pleckstrin homology domain interacting protein.
   
    0.615
PRPF6
pre-mRNA processing factor 6.
   
  
 0.590
SMC5
Structural maintenance of chromosomes 5.
   
    0.583
PNISR
PNN interacting serine and arginine rich protein.
   
  
 0.582
ENSCAPP00000004582
annotation not available
  
    0.564
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.