ENSCAPP00000004174 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

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[Homology]

Score

ENSCAPP00000004174

annotation not available (96 aa)

Predicted Functional Partners:

ZC2HC1A

0.691

SDHB

0.648

TMEM160

0.569

NFU1

0.554

PLSCR3

0.465

ENSCAPP00000007432

0.454

CTC1

0.454

ENSCAPP00000017263

0.454

ENSCAPP00000017174

0.451

SLC22A17

0.445

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTC1	ENSCAPP00000004174	ENSCAPP00000011334	ENSCAPP00000004174	CST telomere replication complex component 1.	annotation not available	0.454
ENSCAPP00000004174	CTC1	ENSCAPP00000004174	ENSCAPP00000011334	annotation not available	CST telomere replication complex component 1.	0.454
ENSCAPP00000004174	ENSCAPP00000007432	ENSCAPP00000004174	ENSCAPP00000007432	annotation not available	annotation not available	0.454
ENSCAPP00000004174	ENSCAPP00000017174	ENSCAPP00000004174	ENSCAPP00000017174	annotation not available	annotation not available	0.451
ENSCAPP00000004174	ENSCAPP00000017263	ENSCAPP00000004174	ENSCAPP00000017263	annotation not available	annotation not available	0.454
ENSCAPP00000004174	NFU1	ENSCAPP00000004174	ENSCAPP00000005112	annotation not available	NFU1 iron-sulfur cluster scaffold.	0.554
ENSCAPP00000004174	PLSCR3	ENSCAPP00000004174	ENSCAPP00000008255	annotation not available	Phospholipid scramblase 3.	0.465
ENSCAPP00000004174	SDHB	ENSCAPP00000004174	ENSCAPP00000014177	annotation not available	Succinate dehydrogenase complex iron sulfur subunit B.	0.648
ENSCAPP00000004174	SLC22A17	ENSCAPP00000004174	ENSCAPP00000015850	annotation not available	Solute carrier family 22 member 17.	0.445
ENSCAPP00000004174	TMEM160	ENSCAPP00000004174	ENSCAPP00000015326	annotation not available	Transmembrane protein 160.	0.569
ENSCAPP00000004174	ZC2HC1A	ENSCAPP00000004174	ENSCAPP00000007800	annotation not available	Zinc finger C2HC-type containing 1A.	0.691
ENSCAPP00000007432	ENSCAPP00000004174	ENSCAPP00000007432	ENSCAPP00000004174	annotation not available	annotation not available	0.454
ENSCAPP00000017174	ENSCAPP00000004174	ENSCAPP00000017174	ENSCAPP00000004174	annotation not available	annotation not available	0.451
ENSCAPP00000017174	TMEM160	ENSCAPP00000017174	ENSCAPP00000015326	annotation not available	Transmembrane protein 160.	0.450
ENSCAPP00000017263	ENSCAPP00000004174	ENSCAPP00000017263	ENSCAPP00000004174	annotation not available	annotation not available	0.454
NFU1	ENSCAPP00000004174	ENSCAPP00000005112	ENSCAPP00000004174	NFU1 iron-sulfur cluster scaffold.	annotation not available	0.554
NFU1	SDHB	ENSCAPP00000005112	ENSCAPP00000014177	NFU1 iron-sulfur cluster scaffold.	Succinate dehydrogenase complex iron sulfur subunit B.	0.949
NFU1	ZC2HC1A	ENSCAPP00000005112	ENSCAPP00000007800	NFU1 iron-sulfur cluster scaffold.	Zinc finger C2HC-type containing 1A.	0.572
PLSCR3	ENSCAPP00000004174	ENSCAPP00000008255	ENSCAPP00000004174	Phospholipid scramblase 3.	annotation not available	0.465
SDHB	ENSCAPP00000004174	ENSCAPP00000014177	ENSCAPP00000004174	Succinate dehydrogenase complex iron sulfur subunit B.	annotation not available	0.648