STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC17Zinc finger CCHC-type containing 17. (217 aa)    
Predicted Functional Partners:
SDCBP2
Syndecan binding protein 2.
    
 0.852
XAB2
XPA binding protein 2.
   
 0.821
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
 0.815
SLU7
SLU7 homolog, splicing factor.
   
 0.813
PNN
Pinin, desmosome associated protein.
    
 
 0.808
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.806
NOP14
NOP14 nucleolar protein.
   
 0.805
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
 0.805
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.805
NOL6
Nucleolar protein 6.
   
  0.804
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.