STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP48Small nuclear ribonucleoprotein U11/U12 subunit 48. (307 aa)    
Predicted Functional Partners:
SF3B3
Splicing factor 3b subunit 3.
    
 0.990
SF3B1
Splicing factor 3b subunit 1.
   
 0.990
CDC5L
Cell division cycle 5 like.
   
 0.989
SF3B2
Splicing factor 3b subunit 2.
   
 0.988
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 0.988
ENSCAPP00000001161
annotation not available
    
 0.987
PRPF8
pre-mRNA processing factor 8.
   
 0.987
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.986
PHF5A
PHD finger protein 5A.
    
 0.986
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.985
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.