Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP48Small nuclear ribonucleoprotein U11/U12 subunit 48. (307 aa)    
Predicted Functional Partners:
ZMAT5
Zinc finger matrin-type 5.
    
 0.999
ZRSR2
Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.
    
 0.998
ENSCAPP00000017572
annotation not available
   
 0.997
ZCRB1
Zinc finger CCHC-type and RNA binding motif containing 1.
    
 0.996
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.995
ENSCAPP00000002111
annotation not available
    
 0.994
ENSCAPP00000001161
annotation not available
    
 0.991
SF3B2
Splicing factor 3b subunit 2.
   
 0.991
SF3B3
Splicing factor 3b subunit 3.
    
 0.989
PHF5A
PHD finger protein 5A.
   
 0.987
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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