ENSCAPP00000004207 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004207

annotation not available (38 aa)

Predicted Functional Partners:

MYSM1

0.625

CYHR1

0.605

KIF18A

0.602

TRAF7

0.544

BUB1

0.536

KMT5A

0.528

PLA2G4A

0.522

WDR90

0.511

SLIT3

0.502

MARS1

0.500

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BUB1	ENSCAPP00000004207	ENSCAPP00000014015	ENSCAPP00000004207	BUB1 mitotic checkpoint serine/threonine kinase.	annotation not available	0.536
BUB1	KIF18A	ENSCAPP00000014015	ENSCAPP00000000308	BUB1 mitotic checkpoint serine/threonine kinase.	Kinesin family member 18A.	0.993
BUB1	MYSM1	ENSCAPP00000014015	ENSCAPP00000004064	BUB1 mitotic checkpoint serine/threonine kinase.	Myb like, SWIRM and MPN domains 1.	0.431
CYHR1	ENSCAPP00000004207	ENSCAPP00000018146	ENSCAPP00000004207	Cysteine and histidine rich 1.	annotation not available	0.605
CYHR1	KMT5A	ENSCAPP00000018146	ENSCAPP00000006000	Cysteine and histidine rich 1.	Lysine methyltransferase 5A.	0.492
ENSCAPP00000004207	BUB1	ENSCAPP00000004207	ENSCAPP00000014015	annotation not available	BUB1 mitotic checkpoint serine/threonine kinase.	0.536
ENSCAPP00000004207	CYHR1	ENSCAPP00000004207	ENSCAPP00000018146	annotation not available	Cysteine and histidine rich 1.	0.605
ENSCAPP00000004207	KIF18A	ENSCAPP00000004207	ENSCAPP00000000308	annotation not available	Kinesin family member 18A.	0.602
ENSCAPP00000004207	KMT5A	ENSCAPP00000004207	ENSCAPP00000006000	annotation not available	Lysine methyltransferase 5A.	0.528
ENSCAPP00000004207	MARS1	ENSCAPP00000004207	ENSCAPP00000013945	annotation not available	methionyl-tRNA synthetase 1.	0.500
ENSCAPP00000004207	MYSM1	ENSCAPP00000004207	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.625
ENSCAPP00000004207	PLA2G4A	ENSCAPP00000004207	ENSCAPP00000018609	annotation not available	Phospholipase A2 group IVA.	0.522
ENSCAPP00000004207	SLIT3	ENSCAPP00000004207	ENSCAPP00000001084	annotation not available	Slit guidance ligand 3.	0.502
ENSCAPP00000004207	TRAF7	ENSCAPP00000004207	ENSCAPP00000018018	annotation not available	TNF receptor associated factor 7.	0.544
ENSCAPP00000004207	WDR90	ENSCAPP00000004207	ENSCAPP00000018448	annotation not available	WD repeat domain 90.	0.511
KIF18A	BUB1	ENSCAPP00000000308	ENSCAPP00000014015	Kinesin family member 18A.	BUB1 mitotic checkpoint serine/threonine kinase.	0.993
KIF18A	ENSCAPP00000004207	ENSCAPP00000000308	ENSCAPP00000004207	Kinesin family member 18A.	annotation not available	0.602
KMT5A	CYHR1	ENSCAPP00000006000	ENSCAPP00000018146	Lysine methyltransferase 5A.	Cysteine and histidine rich 1.	0.492
KMT5A	ENSCAPP00000004207	ENSCAPP00000006000	ENSCAPP00000004207	Lysine methyltransferase 5A.	annotation not available	0.528
MARS1	ENSCAPP00000004207	ENSCAPP00000013945	ENSCAPP00000004207	methionyl-tRNA synthetase 1.	annotation not available	0.500