KLHL40 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KLHL40

Kelch like family member 40. (624 aa)

Predicted Functional Partners:

BBS2

0.973

ENSCAPP00000004998

0.971

ENSCAPP00000002351

0.970

BBS7

0.969

ENSCAPP00000007661

0.969

ENSCAPP00000000952

0.963

KLHL41

0.926

LZTFL1

0.897

MYOT

0.878

ENSCAPP00000016903

0.875

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS2	BBS7	ENSCAPP00000018596	ENSCAPP00000000345	Bardet-Biedl syndrome 2.	Bardet-Biedl syndrome 7.	0.999
BBS2	ENSCAPP00000000952	ENSCAPP00000018596	ENSCAPP00000000952	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSCAPP00000002351	ENSCAPP00000018596	ENSCAPP00000002351	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSCAPP00000004998	ENSCAPP00000018596	ENSCAPP00000004998	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSCAPP00000007661	ENSCAPP00000018596	ENSCAPP00000007661	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSCAPP00000016903	ENSCAPP00000018596	ENSCAPP00000016903	Bardet-Biedl syndrome 2.	annotation not available	0.990
BBS2	KLHL40	ENSCAPP00000018596	ENSCAPP00000004227	Bardet-Biedl syndrome 2.	Kelch like family member 40.	0.973
BBS2	KLHL41	ENSCAPP00000018596	ENSCAPP00000005920	Bardet-Biedl syndrome 2.	Kelch like family member 41.	0.995
BBS2	LZTFL1	ENSCAPP00000018596	ENSCAPP00000003794	Bardet-Biedl syndrome 2.	Leucine zipper transcription factor like 1.	0.995
BBS7	BBS2	ENSCAPP00000000345	ENSCAPP00000018596	Bardet-Biedl syndrome 7.	Bardet-Biedl syndrome 2.	0.999
BBS7	ENSCAPP00000000952	ENSCAPP00000000345	ENSCAPP00000000952	Bardet-Biedl syndrome 7.	annotation not available	0.999
BBS7	ENSCAPP00000002351	ENSCAPP00000000345	ENSCAPP00000002351	Bardet-Biedl syndrome 7.	annotation not available	0.999
BBS7	ENSCAPP00000004998	ENSCAPP00000000345	ENSCAPP00000004998	Bardet-Biedl syndrome 7.	annotation not available	0.999
BBS7	ENSCAPP00000007661	ENSCAPP00000000345	ENSCAPP00000007661	Bardet-Biedl syndrome 7.	annotation not available	0.999
BBS7	ENSCAPP00000016903	ENSCAPP00000000345	ENSCAPP00000016903	Bardet-Biedl syndrome 7.	annotation not available	0.992
BBS7	KLHL40	ENSCAPP00000000345	ENSCAPP00000004227	Bardet-Biedl syndrome 7.	Kelch like family member 40.	0.969
BBS7	KLHL41	ENSCAPP00000000345	ENSCAPP00000005920	Bardet-Biedl syndrome 7.	Kelch like family member 41.	0.995
BBS7	LZTFL1	ENSCAPP00000000345	ENSCAPP00000003794	Bardet-Biedl syndrome 7.	Leucine zipper transcription factor like 1.	0.997
ENSCAPP00000000952	BBS2	ENSCAPP00000000952	ENSCAPP00000018596	annotation not available	Bardet-Biedl syndrome 2.	0.999
ENSCAPP00000000952	BBS7	ENSCAPP00000000952	ENSCAPP00000000345	annotation not available	Bardet-Biedl syndrome 7.	0.999