STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX8Sorting nexin 8. (431 aa)    
Predicted Functional Partners:
VPS35
VPS35 retromer complex component.
   
 0.994
SNX1
Sorting nexin 1.
    
 0.983
SNX6
Sorting nexin 6.
   
 0.981
SNX5
Sorting nexin 5.
   
 0.978
ENSCAPP00000018579
annotation not available
    
 0.975
VPS26A
VPS26, retromer complex component A.
   
 0.970
VPS26B
VPS26, retromer complex component B.
   
 0.968
ENSCAPP00000012690
annotation not available
    
 0.956
TRIM27
Tripartite motif containing 27.
    
  0.942
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
 0.941
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.