UFM1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UFM1

Ubiquitin fold modifier 1. (65 aa)

Predicted Functional Partners:

UBA5

0.970

UFSP2

0.969

UFC1

0.927

UFL1

0.742

DDRGK1

0.727

UBA1

0.700

UBA6

0.700

UBA7

0.700

NAE1

0.688

UBA2

0.662

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDRGK1	UBA5	ENSCAPP00000010160	ENSCAPP00000008983	DDRGK domain containing 1.	Ubiquitin like modifier activating enzyme 5.	0.560
DDRGK1	UFC1	ENSCAPP00000010160	ENSCAPP00000009027	DDRGK domain containing 1.	Ubiquitin-fold modifier conjugating enzyme 1.	0.791
DDRGK1	UFL1	ENSCAPP00000010160	ENSCAPP00000013769	DDRGK domain containing 1.	UFM1 specific ligase 1.	0.946
DDRGK1	UFM1	ENSCAPP00000010160	ENSCAPP00000004242	DDRGK domain containing 1.	Ubiquitin fold modifier 1.	0.727
DDRGK1	UFSP2	ENSCAPP00000010160	ENSCAPP00000000066	DDRGK domain containing 1.	UFM1 specific peptidase 2.	0.641
NAE1	UBA2	ENSCAPP00000008998	ENSCAPP00000017650	NEDD8 activating enzyme E1 subunit 1.	Ubiquitin like modifier activating enzyme 2.	0.632
NAE1	UBA5	ENSCAPP00000008998	ENSCAPP00000008983	NEDD8 activating enzyme E1 subunit 1.	Ubiquitin like modifier activating enzyme 5.	0.464
NAE1	UFC1	ENSCAPP00000008998	ENSCAPP00000009027	NEDD8 activating enzyme E1 subunit 1.	Ubiquitin-fold modifier conjugating enzyme 1.	0.611
NAE1	UFL1	ENSCAPP00000008998	ENSCAPP00000013769	NEDD8 activating enzyme E1 subunit 1.	UFM1 specific ligase 1.	0.479
NAE1	UFM1	ENSCAPP00000008998	ENSCAPP00000004242	NEDD8 activating enzyme E1 subunit 1.	Ubiquitin fold modifier 1.	0.688
UBA1	UBA2	ENSCAPP00000000539	ENSCAPP00000017650	Ubiquitin like modifier activating enzyme 1.	Ubiquitin like modifier activating enzyme 2.	0.729
UBA1	UBA5	ENSCAPP00000000539	ENSCAPP00000008983	Ubiquitin like modifier activating enzyme 1.	Ubiquitin like modifier activating enzyme 5.	0.717
UBA1	UBA6	ENSCAPP00000000539	ENSCAPP00000005765	Ubiquitin like modifier activating enzyme 1.	Ubiquitin like modifier activating enzyme 6.	0.926
UBA1	UBA7	ENSCAPP00000000539	ENSCAPP00000014274	Ubiquitin like modifier activating enzyme 1.	Ubiquitin like modifier activating enzyme 7.	0.914
UBA1	UFC1	ENSCAPP00000000539	ENSCAPP00000009027	Ubiquitin like modifier activating enzyme 1.	Ubiquitin-fold modifier conjugating enzyme 1.	0.611
UBA1	UFL1	ENSCAPP00000000539	ENSCAPP00000013769	Ubiquitin like modifier activating enzyme 1.	UFM1 specific ligase 1.	0.479
UBA1	UFM1	ENSCAPP00000000539	ENSCAPP00000004242	Ubiquitin like modifier activating enzyme 1.	Ubiquitin fold modifier 1.	0.700
UBA2	NAE1	ENSCAPP00000017650	ENSCAPP00000008998	Ubiquitin like modifier activating enzyme 2.	NEDD8 activating enzyme E1 subunit 1.	0.632
UBA2	UBA1	ENSCAPP00000017650	ENSCAPP00000000539	Ubiquitin like modifier activating enzyme 2.	Ubiquitin like modifier activating enzyme 1.	0.729
UBA2	UBA6	ENSCAPP00000017650	ENSCAPP00000005765	Ubiquitin like modifier activating enzyme 2.	Ubiquitin like modifier activating enzyme 6.	0.739