Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDE1BPhosphodiesterase 1B. (489 aa)    
Predicted Functional Partners:
PDE1C
Phosphodiesterase 1C.
   
  0.978
GUCY2C
Guanylate cyclase 2C.
     
 0.971
ADCY5
Adenylate cyclase 5.
     
 0.961
ADCY6
Adenylate cyclase 6.
     
 0.961
ENSCAPP00000006162
annotation not available
     
 0.960
AMPD3
Adenosine monophosphate deaminase 3.
     
 0.956
ENSCAPP00000017763
annotation not available
    
 0.953
ENPP3
Ectonucleotide pyrophosphatase/phosphodiesterase 3.
     
 0.939
AMPD2
Adenosine monophosphate deaminase 2.
     
 0.939
ADCY8
Adenylate cyclase 8.
     
 0.932
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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