Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCM1Pericentriolar material 1. (1842 aa)    
Predicted Functional Partners:
CEP72
Centrosomal protein 72.
    
 
 0.986
ENSCAPP00000002351
annotation not available
   
 
 0.982
CEP131
Centrosomal protein 131.
   
 
 0.981
CEP290
Centrosomal protein 290.
   
 
 0.979
AKAP9
A-kinase anchoring protein 9.
   
 
 0.962
MIB1
Mindbomb E3 ubiquitin protein ligase 1.
    
 
 0.961
ENSCAPP00000002552
annotation not available
    
   0.958
PLK1
Polo like kinase 1.
    
 0.948
CCDC14
Coiled-coil domain containing 14.
    
 
 0.936
KIAA0753
KIAA0753.
    
 
 0.925
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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