Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004286annotation not available (864 aa)    
Predicted Functional Partners:
ENSCAPP00000007576
annotation not available
 
      0.899
VPS35
VPS35 retromer complex component.
   
 
 0.804
ENSCAPP00000016980
annotation not available
    
   0.803
VAPB
VAMP associated protein B and C.
    
 
 0.744
VAPA
VAMP associated protein A.
    
 
 0.699
SYNJ1
Synaptojanin 1.
    
 
 0.689
ENSCAPP00000000528
annotation not available
    
   0.668
DNAJC7
DnaJ heat shock protein family (Hsp40) member C7.
    
   0.621
SYNJ2
Synaptojanin 2.
    
 
 0.615
SPG11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.613
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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