Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTBP1Latent transforming growth factor beta binding protein 1. (1285 aa)    
Predicted Functional Partners:
ENSCAPP00000013524
annotation not available
    
 0.998
TGFB3
Transforming growth factor beta 3.
   
 0.944
ENSCAPP00000013126
annotation not available
    
 0.943
THBS1
Thrombospondin 1.
   
 
 0.940
LAMA2
Laminin subunit alpha 2.
    
 0.844
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.787
ADAMTSL2
ADAMTS like 2.
    
 0.764
THBS2
Thrombospondin 2.
   
 
 0.754
MFAP4
Microfibril associated protein 4.
   
 0.710
ADAMTS10
ADAM metallopeptidase with thrombospondin type 1 motif 10.
    
 0.684
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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