Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEC62SEC62 homolog, preprotein translocation factor. (358 aa)    
Predicted Functional Partners:
SEC63
SEC63 homolog, protein translocation regulator.
   
 0.999
SEC61B
SEC61 translocon beta subunit.
   
 0.992
STK39
Serine/threonine kinase 39.
    
 0.983
SEC61A1
SEC61 translocon alpha 1 subunit.
   
 0.966
SEC61A2
SEC61 translocon alpha 2 subunit.
   
 0.966
SPCS2
Signal peptidase complex subunit 2.
   
 
 0.930
STRADA
STE20 related adaptor alpha.
    
 0.923
STRADB
STE20 related adaptor beta.
    
 0.923
CCPG1
Cell cycle progression 1.
   
 
 0.908
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
     
 0.897
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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